OBO Foundry dashboard analysis¶

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/tmp/ipykernel_25776/4293058459.py:21: FutureWarning:

The `inplace` parameter in pandas.Categorical.reorder_categories is deprecated and will be removed in a future version. Reordering categories will always return a new Categorical object.

Ontologies by number of axioms

Ontologies by number of classes

Ontologies by how many ontologies use it

Different serialisations used

RDF/XML Syntax    175
OWL/XML Syntax      3
unknown             2
RDF/XML             2
Name: syntax, dtype: int64

Breakdown of used Axiom Types

count mean std min 25% 50% 75% max
AnnotationAssertion 180 150285.351648 801198.351032 0.0 1408.50 7025.0 28479.75 9810543.0
Declaration 180 28572.747253 186575.603243 0.0 415.25 1162.0 4759.00 2401853.0
SubClassOf 175 38139.043956 212927.799141 0.0 320.50 1239.5 6542.25 2401824.0
EquivalentClasses 124 2650.543956 13621.460100 0.0 0.00 24.5 192.75 126427.0
SubAnnotationPropertyOf 114 8.093407 17.095024 0.0 0.00 2.0 7.00 120.0
TransitiveObjectProperty 113 6.109890 11.002712 0.0 0.00 2.0 6.00 69.0
SubObjectPropertyOf 102 40.478022 95.617141 0.0 0.00 2.0 36.25 674.0
DisjointClasses 93 27.225275 87.294692 0.0 0.00 1.0 21.00 639.0
ObjectPropertyRange 84 14.318681 27.041764 0.0 0.00 0.0 18.75 142.0
ObjectPropertyDomain 84 14.516484 27.758175 0.0 0.00 0.0 18.00 148.0
InverseObjectProperties 80 9.087912 17.893885 0.0 0.00 0.0 12.00 113.0
SubPropertyChainOf 65 9.329670 25.380662 0.0 0.00 0.0 2.00 149.0
ClassAssertion 62 80.109890 476.022852 0.0 0.00 0.0 18.00 5528.0
FunctionalObjectProperty 47 0.807692 1.701915 0.0 0.00 0.0 1.00 9.0
SymmetricObjectProperty 45 1.598901 8.430974 0.0 0.00 0.0 0.00 80.0
DataPropertyRange 42 1.087912 3.143522 0.0 0.00 0.0 0.00 30.0
DataPropertyDomain 37 1.016484 3.149104 0.0 0.00 0.0 0.00 32.0
IrrefexiveObjectProperty 36 0.598901 2.319411 0.0 0.00 0.0 0.00 26.0
DifferentIndividuals 34 0.675824 4.199364 0.0 0.00 0.0 0.00 56.0
AnnotationPropertyRangeOf 33 1.401099 10.187122 0.0 0.00 0.0 0.00 133.0
SubDataPropertyOf 28 0.829670 3.595362 0.0 0.00 0.0 0.00 33.0
EquivalentObjectProperties 27 1.368132 5.374554 0.0 0.00 0.0 0.00 36.0
FunctionalDataProperty 23 0.472527 1.522143 0.0 0.00 0.0 0.00 11.0
InverseFunctionalObjectProperty 20 0.164835 0.551517 0.0 0.00 0.0 0.00 4.0
AsymmetricObjectProperty 20 0.505495 2.520079 0.0 0.00 0.0 0.00 26.0
Rule 19 1.571429 5.501668 0.0 0.00 0.0 0.00 29.0
DisjointObjectProperties 17 0.236264 1.129320 0.0 0.00 0.0 0.00 10.0
ObjectPropertyAssertion 14 12.593407 102.235615 0.0 0.00 0.0 0.00 1024.0
ReflexiveObjectProperty 11 0.109890 0.503042 0.0 0.00 0.0 0.00 4.0
AnnotationPropertyDomain 9 0.263736 1.623959 0.0 0.00 0.0 0.00 17.0
DisjointUnion 7 0.087912 0.559170 0.0 0.00 0.0 0.00 5.0
DataPropertyAssertion 5 0.181319 1.609736 0.0 0.00 0.0 0.00 20.0
DatatypeDefinition 2 0.109890 1.409914 0.0 0.00 0.0 0.00 19.0
SameIndividual 1 0.005495 0.074125 0.0 0.00 0.0 0.00 1.0

Breakdown of used OWL Class Expression constructs

count mean std min 25% 50% 75% max
Class 179 116975.148352 626870.060759 0.0 1307.00 5096.5 20043.75 7205474.0
ObjectSomeValuesFrom 160 17105.258242 87416.373074 0.0 31.25 452.0 2856.75 853209.0
ObjectIntersectionOf 120 4134.131868 20277.721973 0.0 0.00 29.5 382.50 202009.0
ObjectUnionOf 85 26.934066 89.382140 0.0 0.00 0.0 15.00 767.0
ObjectAllValuesFrom 71 28.346154 147.943792 0.0 0.00 0.0 8.25 1764.0
ObjectComplementOf 64 12.505495 81.756460 0.0 0.00 0.0 2.00 1060.0
ObjectMinCardinality 60 2.192308 7.356085 0.0 0.00 0.0 1.00 57.0
ObjectExactCardinality 47 9.285714 88.773943 0.0 0.00 0.0 1.00 1193.0
ObjectOneOf 42 2.203297 20.234738 0.0 0.00 0.0 0.00 273.0
DataMinCardinality 25 0.236264 0.676523 0.0 0.00 0.0 0.00 4.0
DataSomeValuesFrom 22 6.994505 64.631424 0.0 0.00 0.0 0.00 859.0
DataExactCardinality 22 0.532967 1.634068 0.0 0.00 0.0 0.00 7.0
ObjectHasValue 20 144.153846 1586.411503 0.0 0.00 0.0 0.00 21288.0
ObjectMaxCardinality 19 0.846154 4.759226 0.0 0.00 0.0 0.00 45.0
DataHasValue 17 120.851648 1577.827290 0.0 0.00 0.0 0.00 21288.0
ObjectHasSelf 15 0.225275 0.962742 0.0 0.00 0.0 0.00 6.0
DataAllValuesFrom 3 0.104396 1.032661 0.0 0.00 0.0 0.00 13.0
DataMaxCardinality 2 0.010989 0.104539 0.0 0.00 0.0 0.00 1.0

OBO Score (Experimental)

ontology score score_dash score_impact
120 omo 0.972 0.989 0.956
7 bfo 0.835 0.883 0.786
149 ro 0.801 0.867 0.736
132 pato 0.719 0.986 0.451
63 go 0.703 0.911 0.495
110 obi 0.671 0.930 0.412
19 cl 0.608 0.930 0.286
144 pr 0.579 0.926 0.231
102 ncbitaxon 0.561 0.743 0.379
165 uberon 0.537 0.706 0.368
34 doid 0.532 0.939 0.126
43 envo 0.529 0.882 0.176
113 ogms 0.516 0.796 0.236
10 caro 0.508 0.796 0.220
68 hp 0.506 0.885 0.126
13 chebi 0.504 0.586 0.423
173 wbphenotype 0.503 0.995 0.011
172 wbls 0.503 0.995 0.011
94 mondo 0.491 0.939 0.044
139 plana 0.489 0.973 0.005
162 trans 0.487 0.948 0.027
111 obib 0.485 0.944 0.027
128 opl 0.482 0.949 0.016
62 gno 0.477 0.949 0.005
122 omrse 0.476 0.860 0.093
134 pco 0.476 0.848 0.104
39 eco 0.475 0.945 0.005
138 phipo 0.474 0.937 0.011
96 mp 0.470 0.895 0.044
25 colao 0.470 0.940 0.000
35 dpo 0.469 0.938 0.000
72 iao 0.467 0.934 0.000
159 symp 0.467 0.889 0.044
79 lepao 0.464 0.927 0.000
108 oba 0.460 0.898 0.022
16 chmo 0.459 0.869 0.049
45 eupath 0.457 0.897 0.016
1 aism 0.455 0.893 0.016
31 ddpheno 0.452 0.899 0.005
51 fbdv 0.452 0.888 0.016
40 ecocore 0.451 0.890 0.011
24 cob 0.450 0.877 0.022
151 rxno 0.450 0.894 0.005
125 ontoavida 0.450 0.899 0.000
170 vto 0.445 0.889 0.000
133 pcl 0.445 0.890 0.000
99 mro 0.445 0.889 0.000
58 gecko 0.445 0.889 0.000
57 fypo 0.444 0.888 0.000
178 zeco 0.443 0.886 0.000
8 bspo 0.442 0.791 0.093
41 ecto 0.441 0.865 0.016
181 zp 0.438 0.864 0.011
65 hancestro 0.437 0.858 0.016
74 ico 0.435 0.838 0.033
141 po 0.433 0.768 0.099
179 zfa 0.433 0.850 0.016
95 mop 0.430 0.839 0.022
148 rbo 0.429 0.854 0.005
37 duo 0.428 0.840 0.016
50 fbcv 0.425 0.829 0.022
12 cdno 0.425 0.850 0.000
6 bco 0.425 0.845 0.005
140 planp 0.423 0.842 0.005
155 so 0.423 0.680 0.165
145 psdo 0.421 0.843 0.000
101 nbo 0.420 0.736 0.104
75 ido 0.418 0.716 0.121
117 ohpi 0.416 0.833 0.000
130 ornaseq 0.416 0.832 0.000
161 to 0.416 0.827 0.005
116 ohmi 0.414 0.824 0.005
69 hsapdv 0.410 0.793 0.027
177 xpo 0.409 0.814 0.005
46 exo 0.407 0.791 0.022
174 xao 0.404 0.791 0.016
47 fao 0.404 0.792 0.016
4 apollo_sv 0.404 0.715 0.093
44 epio 0.400 0.799 0.000
127 oostt 0.399 0.786 0.011
175 xco 0.398 0.784 0.011
136 pdumdv 0.397 0.793 0.000
157 stato 0.396 0.715 0.077
33 disdriv 0.395 0.790 0.000
26 cro 0.394 0.788 0.000
56 fovt 0.393 0.786 0.000
60 geno 0.393 0.775 0.011
20 clao 0.393 0.786 0.000
118 olatdv 0.392 0.784 0.000
92 mmusdv 0.391 0.782 0.000
143 ppo 0.390 0.780 0.000
61 geo 0.389 0.734 0.044
84 mf 0.388 0.743 0.033
167 upheno 0.388 0.742 0.033
36 dron 0.386 0.691 0.082
11 cdao 0.384 0.763 0.005
109 obcs 0.382 0.741 0.022
137 peco 0.380 0.727 0.033
82 maxo 0.377 0.737 0.016
158 swo 0.377 0.749 0.005
171 wbbt 0.376 0.740 0.011
14 cheminf 0.375 0.750 0.000
152 sbo 0.375 0.750 0.000
77 kisao 0.375 0.750 0.000
107 oarcs 0.374 0.748 0.000
18 cio 0.374 0.748 0.000
97 mpath 0.374 0.710 0.038
67 hom 0.374 0.748 0.000
98 mpio 0.374 0.743 0.005
15 chiro 0.374 0.748 0.000
160 taxrank 0.374 0.738 0.011
30 ddanat 0.374 0.738 0.011
169 vt 0.373 0.731 0.016
71 htn 0.373 0.747 0.000
38 ecao 0.373 0.746 0.000
123 one 0.373 0.747 0.000
76 ino 0.373 0.730 0.016
0 agro 0.373 0.741 0.005
81 mamo 0.372 0.745 0.000
87 mfomd 0.372 0.729 0.016
32 dideo 0.371 0.732 0.011
52 fideo 0.370 0.740 0.000
154 sepio 0.370 0.735 0.005
22 clyh 0.369 0.739 0.000
124 ons 0.369 0.723 0.016
114 ogsf 0.369 0.739 0.000
146 pso 0.369 0.738 0.000
91 mmo 0.369 0.727 0.011
89 miapa 0.368 0.736 0.000
180 zfs 0.368 0.732 0.005
3 apo 0.368 0.736 0.000
129 opmi 0.368 0.703 0.033
28 cto 0.367 0.735 0.000
176 xlmod 0.367 0.735 0.000
142 poro 0.366 0.733 0.000
106 oae 0.365 0.642 0.088
115 ohd 0.365 0.731 0.000
131 ovae 0.364 0.729 0.000
27 cteno 0.364 0.728 0.000
156 spd 0.364 0.729 0.000
85 mfmo 0.363 0.726 0.000
23 cmo 0.362 0.675 0.049
70 hso 0.360 0.721 0.000
29 cvdo 0.356 0.702 0.011
78 labo 0.356 0.713 0.000
2 amphx 0.355 0.710 0.000
147 pw 0.353 0.695 0.011
121 omp 0.353 0.684 0.022
103 ncit 0.351 0.588 0.115
104 ncro 0.351 0.692 0.011
86 mfoem 0.350 0.696 0.005
105 nomen 0.349 0.699 0.000
88 mi 0.347 0.678 0.016
80 ma 0.346 0.693 0.000
83 mco 0.346 0.692 0.000
54 fobi 0.344 0.688 0.000
48 fbbi 0.344 0.687 0.000
42 emapa 0.343 0.685 0.000
164 txpo 0.343 0.685 0.000
119 omit 0.343 0.664 0.022
49 fbbt 0.343 0.670 0.016
163 tto 0.342 0.684 0.000
66 hao 0.340 0.680 0.000
9 bto 0.338 0.649 0.027
150 rs 0.337 0.669 0.005
135 pdro 0.334 0.645 0.022
90 micro 0.333 0.660 0.005
55 foodon 0.331 0.580 0.082
64 gsso 0.329 0.642 0.016
21 clo 0.328 0.590 0.066
73 iceo 0.328 0.655 0.000
168 vo 0.324 0.571 0.077
59 genepio 0.320 0.607 0.033
126 ontoneo 0.320 0.640 0.000
53 flopo 0.318 0.630 0.005
112 ogg 0.316 0.587 0.044
153 scdo 0.316 0.632 0.000
17 cido 0.305 0.599 0.011
5 aro 0.302 0.582 0.022
93 mod 0.295 0.580 0.011
166 uo 0.000 0.000 0.000
100 ms 0.000 0.000 0.000

OBO Score Summary

count mean std min 25% 50% 75% max
score 182.0 0.410198 0.100372 0.0 0.36500 0.3895 0.4450 0.972
score_dash 182.0 0.769143 0.128885 0.0 0.71075 0.7480 0.8595 0.995
score_impact 182.0 0.051313 0.132126 0.0 0.00000 0.0110 0.0270 0.956

OBO dependency graph